DreamDIA

Deep representation model-based DIA data processing software suite

https://github.com/xmuyulab/DreamDIA-XMBD

Diamond

Multi-modal DIA data processing toolbox with peptide-centric, spectrum-centric, library-based and library-free analysis strategies integrated

https://github.com/xmuyulab/Diamond

scRNAseq_pipelines

Off-the-shelf scRNA-seq data processing pipeline suite with Cell Ranger, Drop-seq-tools, UMI-tools, dropEst, scPipe, umis and zUMIs integrated

https://github.com/xmuyulab/scRNAseq_pipelines

DAISM-XMBD

Highly-accurate and unbiased immune-cell proportion estimation tool based on in silico mixing data augmentation strategy and deep neural networks for bulk RNA sequencing data

https://github.com/xmuyulab/DAISM-XMBD